miRBase entry: sha-mir-340

Stem-loop sha-mir-340


Accession
MI0019601
Description
Sarcophilus harrisii sha-mir-340 precursor miRNA


Sequence

auucccaccuccaauuaaaacacauuggcaucaguaugaaggaugagcauauacaaggcaugacuauaaaguaaugagacugauccugcacacaaacaccAGUCUCAUUACUUUAUAGUCAcacccuguaucuuaaagaucuccagucau
..........(((((........))))).......((((.(((((((...(((((.((..((((((((((((((((((((((.................))))))))))))))))))))))..)).)))))))))......)))..))))

Structure
auucccaccuccaauuaaaacacauuggcaucagu    -a   ------    cau     a  ca                      auccugc 
                                   auga  gga      ugag   auaca gg  ugacuauaaaguaaugagacug       a
                                   ||||  |||      ||||   ||||| ||  ||||||||||||||||||||||       c
                                   uacu  ccu      auuc   uaugu cc  ACUGAUAUUUCAUUACUCUGAc       a
-----------------------------------    ga   cuagaa    ---     c  ac                      cacaaac 


Annotation confidence Not enough data
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Genome context
GL834730.1: 741012-741161 [+]

Database links

Mature sha-miR-340

Accession MIMAT0022775
Description Sarcophilus harrisii sha-miR-340 mature miRNA
Sequence 101 - AGUCUCAUUACUUUAUAGUCA - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87