miRBase entry: sha-mir-140

Stem-loop sha-mir-140


Accession
MI0019604
Description
Sarcophilus harrisii sha-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140


Sequence

uugugggcuuccgguguggcuccugcccuuugugugugugugucucucucuguguccugccagugguuuuacccuaugguagguuacgucaugcuguucuACCACAGGGUAGAACCACGGAcaggauacuggggcgcucucggcaucgga
.........(((((((((((....))).......((.(.(((((((.....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))).).))))))))))

Structure
uugugggcu        ggcuccugcccuuugug  u u       ucucu        -  a             a       u  c  c 
         uccggugu                 ug g gugucuc     guguccug cc gugguuuuacccu ugguagg ua gu  
         ||||||||                 || | |||||||     |||||||| || ||||||||||||| ||||||| || || a
         aggcuacg                 gc c cgcgggg     cauaggac GG CACCAAGAUGGGA ACCAucu gu cg  
---------        -----------------  u u       ----u        A  -             C       u  -  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL834769.1: 1909500-1909649 [+]

Database links

Mature sha-miR-140

Accession MIMAT0022778
Description Sarcophilus harrisii sha-miR-140 mature miRNA
Sequence 101 - ACCACAGGGUAGAACCACGGA - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87