miRBase entry: sha-mir-202

Stem-loop sha-mir-202


Accession
MI0019606
Description
Sarcophilus harrisii sha-mir-202 precursor miRNA
Gene family
MIPF0000121; mir-202


Sequence

acccagcucagaauggcucgugguuccuuuUUCCUAUGCAUAUACUUCUUugagaauaaauucuaaagaggcguagggcaugggaaaauggggccacggagcuccuccuccucgucuuccucgggacuucggcuuccuccucagcgcccu
..........((..(((((((((((((.(((((((((((.(((.(((((((.((((....))))))))))).)))..))))))))))).)))))))).)))))..)).(((.((.......)))))....(((............)))..

Structure
---------------------------------acccagcuca  au     -        u           -A   A       g    u 
                                           ga  ggcuc gugguucc uuUUCCUAUGC  UAU CUUCUUu agaa a
                                           ||  ||||| |||||||| |||||||||||  ||| ||||||| ||||  
                                           cu  ucgag caccgggg aaaaggguacg  aug ggagaaa ucuu a
ucccgcgacuccuccuucggcuucagggcuccuucugcuccuc  cc     g        u           gg   c       -    a 


Annotation confidence Not enough data
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Genome context
GL835536.1: 120399-120548 [+]

Database links

Mature sha-miR-202

Accession MIMAT0022780
Description Sarcophilus harrisii sha-miR-202 mature miRNA
Sequence 31 - UUCCUAUGCAUAUACUUCUU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87