miRBase entry: sha-mir-1540

Stem-loop sha-mir-1540


Accession
MI0019607
Description
Sarcophilus harrisii sha-mir-1540 precursor miRNA
Gene family
MIPF0001772; mir-1540


Sequence

aucuccucgcaggcgaaaugggucucucuggucuaggucaggaagcucaauguggugggggugauuccauggagcauaugcucuggcucucuggggauggACAUGCGCUCUAUGGAAUCACccccgcuacauaagugucuguguaguaga
.(((.((((((((((...(((((.((.((((......)))))).)))))((((((((((((((((((((((((((.((((.(((..(((....)))..))))))).))))))))))))))))))))))))))...)))))))).)).)))

Structure
a   c  -        aaaugggucucucuggucuaggucaggaagcuca                          a    c   gg   u 
 ucu cu cgcaggcg                                  auguggugggggugauuccauggagc uaug ucu  cuc c
 ||| || ||||||||                                  |||||||||||||||||||||||||| |||| |||  |||  
 aga ga gugucugu                                  uacaucgccccCACUAAGGUAUCUCG GUAC Agg  ggg u
-   u  u        -------------------------------gaa                          C    -   ua   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL836570.1: 10620-10769 [+]

Database links

Mature sha-miR-1540

Accession MIMAT0022781
Description Sarcophilus harrisii sha-miR-1540 mature miRNA
Sequence 101 - ACAUGCGCUCUAUGGAAUCAC - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87