miRBase entry: sha-mir-9

Stem-loop sha-mir-9


Accession
MI0019609
Description
Sarcophilus harrisii sha-mir-9 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

gcaaagucuugugagggaagugaguuguuaUCUUUGGUUAUCUAGCUGUAUgaguguauuggucuucauaaagcuagauaaccgaaaguaaaaacuccuucaagaucuucgaggagcguaugaaaaugaaagaccacuucaagaaacagu
((....((((.(((((((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).....))))))))))).........((((.......)))).........

Structure
---------------------------------  aaag    g     -----    u     g    C               G      u ua 
                                 gc    ucuu ugagg     gaag gaguu uuaU UUUGGUUAUCUAGCU UAUgag g  u
                                 ||    |||| |||||     |||| ||||| |||| ||||||||||||||| |||||| |  u
                                 cg    agga gcuuc     cuuc cucaa aaug aagccaauagaucga auacuu c  g
ugacaaagaacuucaccagaaaguaaaaguaug  ----    -     uagaa    -     a    a               a      - ug 


Annotation confidence Not enough data
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Genome context
GL841279.1: 926517-926666 [+]

Database links

Mature sha-miR-9

Accession MIMAT0022783
Description Sarcophilus harrisii sha-miR-9 mature miRNA
Sequence 31 - UCUUUGGUUAUCUAGCUGUAU - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87