miRBase entry: sha-mir-23b

Stem-loop sha-mir-23b


Accession
MI0019614
Description
Sarcophilus harrisii sha-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

cuuuuguugugaaaguaugaacucaagaggacaccaugauuuucuugagugcucuggcugcuuggguuccuggcaugcugauuugugacuuaagauuaaaAUCACAUUGCCAGGGAUUAccacgcagccaugacguuggcugcucuucca
.......((.(((((((...(((((((((((........)))))))))))(((((((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))).)).))....)))).)))))

Structure
cuuuugu  u   -    ugaacucaagaggacaccaugauuuucuugagu  -  -       u   --          -  c      gugacu 
       ug gaa agua                                 gc uc uggcugc ugg  guuccuggca ug ugauuu      u
       || ||| ||||                                 || || ||||||| |||  |||||||||| || ||||||       
       ac cuu ucgu                                 ug ag accgacg acc  UAGGGACCGU AC ACUAaa      a
-------  -   c    -----------------------------cggu  c  u       c   AU          U  -      auuaga 


Annotation confidence Not enough data
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Genome context
GL841474.1: 1159813-1159962 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sha-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-miR-23b

Accession MIMAT0022788
Description Sarcophilus harrisii sha-miR-23b mature miRNA
Sequence 101 - AUCACAUUGCCAGGGAUUA - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87