miRBase entry: sha-mir-27b

Stem-loop sha-mir-27b

Accession

MI0019615

Description

Sarcophilus harrisii sha-mir-27b precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

cgaagauguucuccagcccuuuaauaaugcucagaggacgaccucucuaacaaggugcagagcuuagcugauuggugaacaguaauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggugagaugggaaccuu
.......((((((.(((...........)))..)))))).((((((((....(((((((((((((((((.((((.(((((((...............))))))))))))))))))))))))))))..)))).))))..............

Structure

cgaagauguucuccagcccuuuaauaaugcucagaggacg    -    aaca                 g    g       uaauug 
                                        accu cucu    aggugcagagcuuagcu auug ugaacag      a
                                        |||| ||||    ||||||||||||||||| |||| |||||||      u
                                        ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu      u
--------------------------uuccaaggguagag    a    --ag                 -    -       ucuccu

Annotation confidence Not enough data

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Genome context

GL841474.1: 1160030-1160179 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sha-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-27b

Accession	MIMAT0022789
Description	Sarcophilus harrisii sha-miR-27b mature miRNA
Sequence	101 - UUCACAGUGGCUAAGUUCUGC - 121
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87