miRBase entry: sha-mir-7

Stem-loop sha-mir-7


Accession
MI0019620
Description
Sarcophilus harrisii sha-mir-7 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

uuauauagagccuguagaaaauauggaagauuucauuggauauuggccuaguucuguguggaagacuagugauuuuguuguuuuuagauaacuaaaacgaCAACAAAUCACAGUCUGCCAUauggcacaggccaugccucuacaggauaa
..........((((((((....(((((....))))).((....((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).))))))))..))))))))))....

Structure
uuauauagag        aaauauggaagauuucauu  auau      a  u        a     a       u      --     a 
          ccuguaga                   gg    uggccu gu cugugugg agacu gugauuu guuguu  uuuag u
          ||||||||                   ||    |||||| || |||||||| ||||| ||||||| ||||||  |||||  
          ggacaucu                   cc    accgga ca gguaUACC UCUGA CACUAAA CAACag  aaauc a
------aaua        -------------------  --gu      -  c        G     -       -      ca     a 


Annotation confidence Not enough data
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Genome context
GL841540.1: 2528669-2528818 [+]

Database links

Mature sha-miR-7

Accession MIMAT0022793
Description Sarcophilus harrisii sha-miR-7 mature miRNA
Sequence 101 - CAACAAAUCACAGUCUGCCAU - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87