miRBase entry: sha-mir-221

Stem-loop sha-mir-221


Accession
MI0019624
Description
Sarcophilus harrisii sha-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

uauguuauccagaugaaaagaauugguuuuguaggaagaacauccagguuuggggcaugaaccuggcauacaauguagaauucuguguuuauuaaguaacAGCUACAUUGUCUGCUGGGUUucaggcuaccugggaauauacaucuaacu
.(((((.(((..((((((........)))))).)))..)))))((((((....(((.(((((((((((.(((((((((....((((............))))))))))))).))))))).)))).)))))))))................

Structure
uauguuauccagaugaaaagaauugguuuuguaggaagaacau      uugg   a    -       u         aauu    guuua 
                                           ccaggu    ggc ugaa ccuggca acaauguag    cugu     u
                                           ||||||    ||| |||| ||||||| |||||||||    ||||      
                                           ggucca    ucg acuU GGGUCGU UGUUACAUC    GAca     u
---------------------------ucaaucuacauauaag      ----   g    U       C         ----    augaa 


Annotation confidence Not enough data
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Genome context
GL849540.1: 1794391-1794540 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sha-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-miR-221

Accession MIMAT0022797
Description Sarcophilus harrisii sha-miR-221 mature miRNA
Sequence 101 - AGCUACAUUGUCUGCUGGGUU - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87