miRBase entry: sha-mir-200a

Stem-loop sha-mir-200a


Accession
MI0019632
Description
Sarcophilus harrisii sha-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

aaagaucacggcaaggucaucagugcugcuccagccccguggcacgaagugggccucugugggcaucuuacuagacagugcuggauuuuuggauguauucUAACACUGUCUGGUAACGAuguuuaaagagggaacccgacccggcaggug
......(((.((..((((....(((((((.........))))))).....((((((((.(((((((((((((((((((((.((((.............)))).))))))))))))).)))))))).)))))...)))))))..))..)))

Structure
aaagau   -g  aa    aucagugcugcuccagccccguggcacgaagu   ---     g        -             c    uuuuu 
      cac  gc  gguc                                ggg   ccucu ugggcauc uuacuagacagug ugga     g
      |||  ||  ||||                                |||   ||||| |||||||| ||||||||||||| ||||     g
      gug  cg  ccag                                ccc   ggaga auuuguAG AAUGGUCUGUCAC AUcu     a
------   ga  gc    --------------------------------   aag     a        C             A    uaugu 


Annotation confidence Not enough data
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Genome context
GL849763.1: 162393-162542 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sha-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-miR-200a

Accession MIMAT0022805
Description Sarcophilus harrisii sha-miR-200a mature miRNA
Sequence 101 - UAACACUGUCUGGUAACGA - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87