miRBase entry: sha-mir-338

Stem-loop sha-mir-338


Accession
MI0019646
Description
Sarcophilus harrisii sha-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

cacgagcggccaugggggcagccucucccccaccaccacugcucaucuuggcuuuccuccccaacaauauccugaugcugagugagcggcacauagagacUCCAGCAUCAGUGAUUUUGUUGaagaggguggcugccggcuucuuccuga
..((.(((((((((((((.((...))))))).........(((......)))...((((..((((((.(((((((((((((((...............))).))))))))).))).))))))..))))))))))))))............

Structure
----------ca  a        gggggcagccucucccccaccaccacugcucaucuuggcuuu    cc      u   -         -   gagcgg 
            cg gcggccau                                          ccuc  caacaa auc cugaugcug agu      c
            || ||||||||                                          ||||  |||||| ||| ||||||||| |||      a
            gc cgucggug                                          ggag  GUUGUU UAG GACUACGAC Uca      c
aguccuucuucg  -        ------------------------------------------    aa      U   U         C   gagaua 


Annotation confidence Not enough data
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Genome context
GL856847.1: 53405-53554 [+]

Database links

Mature sha-miR-338

Accession MIMAT0022818
Description Sarcophilus harrisii sha-miR-338 mature miRNA
Sequence 101 - UCCAGCAUCAGUGAUUUUGUUG - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87