miRBase entry: sha-mir-1549

Stem-loop sha-mir-1549


Accession
MI0019652
Description
Sarcophilus harrisii sha-mir-1549 precursor miRNA
Gene family
MIPF0001345; mir-1549


Sequence

guguuuacgaaaaaagacucguuuugugaggauucgaggccaucuaacggcuuguugcuagguagccgggcucguggguaggagcugcguucacuucugcUUCCGCCCUGCAAGCCCGGuagcugguaacaaauucgcugcguguaggcc
((.(((((((((.........))))))))).))....((((......((((((((((((((.((.(((((((.((((((.(((((.............))))).)))).)).))))))))).))))))))))....))))......))))

Structure
guguuuacgaaaaaagacucguuuugugaggauucga    aucuaa    ----          g  g       c  -    a     ugcgu 
                                     ggcc      cggc    uuguugcuag ua ccgggcu gu gggu ggagc     u
                                     ||||      ||||    |||||||||| || ||||||| || |||| |||||     c
                                     ccgg      gucg    aacaaugguc au GGCCCGA CG CCCG CUUcg     a
-------------------------------------    augugc    cuua          g  -       A  U    C     ucuuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL861612.1: 2123585-2123734 [+]

Database links

Mature sha-miR-1549

Accession MIMAT0022824
Description Sarcophilus harrisii sha-miR-1549 mature miRNA
Sequence 101 - UUCCGCCCUGCAAGCCCGG - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87