miRBase entry: sha-mir-141

Stem-loop sha-mir-141


Accession
MI0019654
Description
Sarcophilus harrisii sha-mir-141 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

auagagaugcuuacugugauuggccagcucuggcccuggccgugcccagcucuggggccaucuuccagugcaguguuggaucguguaaucgugaagcuucUAACACUGUCUGGUAAAGAUGccccccggguugguucucccuucggugac
..........((((((.....((((((........))))))....(((((((.((((.((((((((((.((((((((((((((((....)))))....)))))))))))))))..)))))).)))).))))))).........)))))).

Structure
auagagaugc      ugauuggccagcucuggcccuggccgugc       u    c      --    u           ----     u 
          uuacug                             ccagcuc gggg caucuu  ccag gcaguguugga    ucgug a
          ||||||                             ||||||| |||| ||||||  |||| |||||||||||    |||||  
          aguggc                             gguuggg cccc GUAGAA  GGUC UGUCACAAUcu    agugc a
---------c      --------------------uucccucuu       c    c      AU    -           ucga     u 


Annotation confidence Not enough data
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Genome context
GL861612.1: 2158436-2158585 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sha-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-miR-141

Accession MIMAT0022826
Description Sarcophilus harrisii sha-miR-141 mature miRNA
Sequence 101 - UAACACUGUCUGGUAAAGAUG - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87