miRBase entry: mtr-MIR396c

Stem-loop mtr-MIR396c


Accession
MI0019664
Description
Medicago truncatula mtr-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
4 open access papers mention mtr-MIR396c
(9 sentences)

Sequence

uuuauggauggucuucuuagugguuuuccacggcuuucuugaacuguauugcaugguuucucaaugcaacauaauuucaauuagcgcaAUUCAAGAAGGUCGUGGAAAAucacugugaugaucugguucuuuuu
.....((((((((.((.((((((((((((((((((((((((((.(((.((((((.........))))))................))).)))))))))))))))))))))))))).)).))))..)))).....

Structure
uuuau    --    u  u                          c   ---------------a      ggu 
     ggau  gguc uc uagugguuuuccacggcuuucuugaa ugu                uugcau   u
     ||||  |||| || |||||||||||||||||||||||||| |||                ||||||   u
     cuug  cuag ag gucacuAAAAGGUGCUGGAAGAACUU acg                aacgua   c
uuuuu    gu    u  u                          A   cgauuaacuuuaauac      acu 


Annotation confidence Not enough data
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Genome context
chr1: 3016845-3016978 [-]

Database links

Mature mtr-miR396c

Accession MIMAT0023119
Description Medicago truncatula mtr-miR396c mature miRNA
Sequence 89 - AUUCAAGAAGGUCGUGGAAAA - 109
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553