miRBase entry: mtr-MIR5743a

Stem-loop mtr-MIR5743a


Accession
MI0019666
Description
Medicago truncatula mtr-MIR5743a precursor miRNA
Gene family
MIPF0001572; MIR5743


Sequence

uuuuuuuggaUGAGAACUGUUUUCCGCACCUUuggaaauacaaacaaacaaaggugggaaaacauuucucaucuaaacaau
....((((((((((((.((((((((.((((((((..............)))))))))))))))).))))))))))))....

Structure
uuuu            C        G        gaaaua 
    uuuggaUGAGAA UGUUUUCC CACCUUug      c
    |||||||||||| |||||||| ||||||||       
    aaaucuacucuu acaaaagg guggaaac      a
uaac            u        -        aaacaa 


Annotation confidence Not enough data
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Genome context
chr1: 8428934-8429014 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5743a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5743a

Accession MIMAT0023121
Description Medicago truncatula mtr-miR5743a mature miRNA
Sequence 11 - UGAGAACUGUUUUCCGCACCUU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553