miRBase entry: mtr-MIR5750

Stem-loop mtr-MIR5750


Accession
MI0019675
Description
Medicago truncatula mtr-MIR5750 precursor miRNA


Sequence

gugugagaaaAAGAGAGAUAGAUCAGAAUUGACAauguacauaagcaacaaacacaaguauuuauggcccaaaaaucaaaguuaauauugugcauaaacaucaauauuuaauagggguguacuuuuacuaguuaguguaucccuauuaaauauggauguguaugcauaacguuagcauugauuuuuggacuauauauacauguguuuguugcuuauguacaacuucaauuuugaucuaucucucuuucucuaauacu
((((.(((.(((((((((((((((((((((((...(((((((((((((((((((((.((((.(((((.(((((((((((.((((((.(((((((((.(((((.((((((((((((((((((((..........)))))))))))))))))))).))))).))))))))).)))))).))))))))))).))))).)))).)))))))))))))))))))))...))))))))))))))))))))))).))).)))).

Structure
-    g   a                       CAa                     a    u     c           a      a         a     a                    uuua 
 gugu aga aAAGAGAGAUAGAUCAGAAUUGA   uguacauaagcaacaaacaca guau uaugg ccaaaaaucaa guuaau uugugcaua acauc auauuuaauagggguguacu    c
 |||| ||| |||||||||||||||||||||||   ||||||||||||||||||||| |||| ||||| ||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||     
 caua ucu uuucucucuaucuaguuuuaacu   acauguauucguuguuugugu caua auauc gguuuuuaguu cgauug aauacguau uguag uauaaauuaucccuauguga    u
u    a   c                       uca                     a    u     a           a      c         g     g                    uuga 


Annotation confidence Not enough data
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Genome context
chr3: 7917931-7918187 [-]

Database links

Mature mtr-miR5750

Accession MIMAT0023130
Description Medicago truncatula mtr-miR5750 mature miRNA
Sequence 11 - AAGAGAGAUAGAUCAGAAUUGACA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553