miRBase entry: mtr-MIR5759

Stem-loop mtr-MIR5759


Accession
MI0019691
Description
Medicago truncatula mtr-MIR5759 precursor miRNA


Sequence

auaauuucugAAGGGGGUGAAAAGAUUCAAAuaaucgguuaagugugugguggucaucuuagcuucuacauuauccaacaauaauuguguaaguaguaugucuaagauagcagcccucacaaucuaaugucuauugaaucuuuucuucccauuucaaaaguugua
(((((((.(((((((((.((((((((((((.((..((......((((.(((.((.((((((((..((((.((((.(((......))).))))))))...).))))))).)).)))..))))......))..)))))))))))))).)))).))))).))))))).

Structure
-       c     -    U            A  au  guuaag    -u   g  c       - -uu    a    c   ca 
 auaauuu ugAAG GGGG GAAAAGAUUCAA ua  cg      ugug  ggu gu aucuuag c   cuac uuau caa  a
 ||||||| ||||| |||| |||||||||||| ||  ||      ||||  ||| || ||||||| |   |||| |||| |||   
 uguugaa acuuu cccu cuuuucuaaguu au  gu      acac  ccg cg uagaauc g   gaug aaug guu  u
a       a     a    u            -  cu  aaucua    uc   a  a       u uau    -    u   aa 


Annotation confidence Not enough data
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Genome context
chr7: 27924451-27924615 [+]

Database links

Mature mtr-miR5759

Accession MIMAT0023146
Description Medicago truncatula mtr-miR5759 mature miRNA
Sequence 11 - AAGGGGGUGAAAAGAUUCAAA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553