miRBase entry: mtr-MIR5206b

Stem-loop mtr-MIR5206b


Accession
MI0019697
Description
Medicago truncatula mtr-MIR5206b precursor miRNA
Gene family
MIPF0001288; MIR5037


Sequence

gaaggccuucaguaacccucaaaggcuuccauggaaucacauguuaugguuagauuaaucauaacuuugaccagugaugugaaaaaaucGUGGGAUCCGUUGAUGGGUUACugaaagcuuu
.(((((.(((((((((((((((.((.((((((((..((((((....(((((((((((....))).))))))))...)))))).....)))))))).)).)))).))))))))))).)))))

Structure
g     c           -    a  c        ---aa      guua        -   a 
 aaggc uucaguaaccc ucaa gg uuccaugg     ucacau    ugguuaga uua u
 ||||| ||||||||||| |||| || ||||||||     ||||||    |||||||| |||  
 uuucg aaguCAUUGGG AGUU CC AGGGUGcu     agugua    accaguuu aau c
-     a           U    G  U        aaaaa      -gug        c   a 


Annotation confidence Not enough data
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Genome context
chr7: 23959036-23959156 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mtr-MIR5206b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5206b

Accession MIMAT0023152
Description Medicago truncatula mtr-miR5206b mature miRNA
Sequence 90 - GUGGGAUCCGUUGAUGGGUUAC - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553