miRBase entry: gma-MIR5771

Stem-loop gma-MIR5771


Accession
MI0019716
Description
Glycine max gma-MIR5771 precursor miRNA


Sequence

cccugggugauucagaaguuguuaaggaauuuacaaggauaguggaaAUCUCAAGUGGAUUGCUUAAGGACuggacguagg
.((((.((........((((.(((((.(((((((..((((.......))))...))))))).))))).))))..)).))))

Structure
c    g  gauucaga    g     g       -aa    ag 
 ccug gu        aguu uuaag aauuuac   ggau  u
 |||| ||        |||| ||||| |||||||   ||||  g
 ggau ca        uCAG AAUUC UUAGGUG   UCUA  g
-    g  ------gg    G     G       AAC    aa 


Annotation confidence Not enough data
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Genome context
chr2: 38012669-38012749 [+]

Database links

Mature gma-miR5771

Accession MIMAT0023171
Description Glycine max gma-miR5771 mature miRNA
Sequence 48 - AUCUCAAGUGGAUUGCUUAAGGAC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553