Stem-loop gma-MIR5779

Accession

MI0019729

Description

Glycine max gma-MIR5779 precursor miRNA

Sequence

gcuucuaagcCAAGUCCAAAGUAGGAAUGUUGCAuuuucaaacaauuuguuagcauuggaaaacaguauucuauuuuugaguugccaaauagaccauguuaaagccaaccaccaauacugccaucucuucauccuuaugccuucagccugaauauguguauguugaaggaaaugauguuuuggaguuagcgggaaagca
((((((..((.((.(((((((....(((((((((..((.....))..)).)))))))(((...(((((((......(((.(((....((((.....))))..)))))).....)))))))...)))...((((......((((((((.((........)).))))))))....))))))))))).)).)).)).)))).

Structure

-    -  aa  C  G       --------------------------------------------------------------------------------------------------------------------UAGG       -  uu  c 
 gcuu cu  gc AA UCCAAAG                                                                                                                        AAUGUUG CA  uu a
 |||| ||  || || |||||||                                                                                                                        ||||||| ||  || a
 cgaa gg  cg uu agguuuu                                                                                                                        uuacgau gu  aa a
a    a  -g  a  g       guaguaaaggaaguuguauguguauaaguccgacuuccguauuccuacuucucuaccgucauaaccaccaaccgaaauuguaccagauaaaccguugaguuuuuaucuuaugacaaaagg       u  uu  c 

Annotation confidence Not enough data

Genome context

chr6: 12762118-12762316 [-]

Mature gma-miR5779

• Accession: MIMAT0023184
• Description: Glycine max gma-miR5779 mature miRNA
• Sequence: 11 - CAAGUCCAAAGUAGGAAUGUUGCA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553