Stem-loop sequence gma-MIR399a

Accession

MI0019739 (change log)

Description

Glycine max miR399a stem-loop

Gene family

MIPF0000015; MIR399

Literature search

15 open access papers mention gma-MIR399a
(116 sentences)

Stem-loop

   aaaac   u       uu     ua         aau    a   cca 
5'      agc auagggc  cucuu  uuggcagga   uauc uga   c
        ||| |||||||  |||||  |||||||||   |||| |||    
3'      ucg ugucccg  gagag  aaccguucu   auag acu   u
   uuuca   u       uu     ga         ---    -   acu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr10: 46844955-46845048 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR399a

• gma-MIR399a: chr10: 46844955-46845048 [+]
• gma-MIR399m: chr10: 46849030-46849140 [+]

Database links

• miRBase Tracker:MI0019739

Mature sequence gma-miR399a

• Accession: MIMAT0023194
• Sequence: 64 - ugccaaaggagaguugcccug - 84
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).