miRBase entry: gma-MIR399a

Stem-loop gma-MIR399a


Accession
MI0019739
Description
Glycine max gma-MIR399a precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
15 open access papers mention gma-MIR399a
(120 sentences)

Sequence

aaaacagcuauagggcuucucuuuauuggcaggaaauuaucaugaccacuucaucagauaucuUGCCAAAGGAGAGUUGCCCUGuugcuacuuu
.....(((.(((((((..((((((.(((((((((...((((.(((........)))))))))))))))).))))))..))))))).))).....

Structure
aaaac   u       uu      a         aau    a   cca 
     agc auagggc  cucuuu uuggcagga   uauc uga   c
     ||| |||||||  |||||| |||||||||   |||| |||    
     ucg uGUCCCG  GAGAGG AACCGUucu   auag acu   u
uuuca   u       UU      A         ---    -   acu 


Annotation confidence Not enough data
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Genome context
chr10: 46844955-46845048 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR399a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR399a

Accession MIMAT0023194
Description Glycine max gma-miR399a mature miRNA
Sequence 64 - UGCCAAAGGAGAGUUGCCCUG - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553