miRBase entry: gma-MIR172k

Stem-loop gma-MIR172k


Accession
MI0019746
Description
Glycine max gma-MIR172k precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
27 open access papers mention gma-MIR172k
(127 sentences)

Sequence

uuguuugcggauguagcaccaucaagauucacaugcaaaugaaggugggugggacuaugaugcaaucuaagugcucugccaauccauugguauuuuuugguggUGAAUCUUGAUGAUGCUGCAUcagccauaaa
......((.(((((((((.(((((((((((((...((((....(((((((.((.....((.(((.......)))))..)).))))))).......))))...))))))))))))).))))))))).))......

Structure
uuguuu  g         c             aug    ---ugaa       g  acuau  u   au 
      gc gauguagca caucaagauucac   caaa       ggugggu gg     ga gca  c
      || ||||||||| |||||||||||||   ||||       ||||||| ||     || |||  u
      cg cUACGUCGU GUAGUUCUAAGUg   guuu       uuaccua cc     cu cgu  a
aaauac  a         A             gug    uuuaugg       a  ---gu  -   ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 33517484-33517617 [+]

Database links

Mature gma-miR172k

Accession MIMAT0023201
Description Glycine max gma-miR172k mature miRNA
Sequence 104 - UGAAUCUUGAUGAUGCUGCAU - 124
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553