miRBase entry: gma-MIR2606a

Stem-loop gma-MIR2606a


Accession
MI0019771
Description
Glycine max gma-MIR2606a precursor miRNA
Gene family
MIPF0000888; MIR2606

Literature search
1 open access papers mention gma-MIR2606a
(1 sentences)

Sequence

aaagcuuauauacaguuccuuagguucuuuuggugcucuucuucaucaauuagaaucgaaguuucaccuugauaaucucuuaauaaagguuugcauuaaagaucaacauaaauuaccgaguugaaauuccaauuuugauugaagaauagcaccAAAAGCACUUAAGGAACGGUAucuaaguuuc
.(((((((.((((.(((((((((((.(((((((((((.(((((((...((((((((.(.(((((((.((((.((((...(((.....(((((.......)))))....))))))).)))).))))))).).))))))))))))))).))))))))))).))))))))))).)))).))))))).

Structure
a       u    a           u           c       uca        c a       c    a    cuc   auaaa     gc 
 aagcuua auac guuccuuaggu cuuuuggugcu uucuuca   auuagaau g aguuuca cuug uaau   uua     gguuu  a
 ||||||| |||| ||||||||||| ||||||||||| |||||||   |||||||| | ||||||| |||| ||||   |||     |||||  u
 uuugaau uAUG CAAGGAAUUCA GAAAAccacga aagaagu   uaguuuua c uuaaagu gagc auua   aau     cuaga  u
c       c    G           C           u       ---        a c       u    c    ---   -acaa     aa 


Annotation confidence Not enough data
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Genome context
chr20: 34012454-34012637 [+]

Database links

Mature gma-miR2606a

Accession MIMAT0023226
Description Glycine max gma-miR2606a mature miRNA
Sequence 154 - AAAAGCACUUAAGGAACGGUA - 174
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553