miRBase entry: gma-MIR395f

Stem-loop gma-MIR395f


Accession
MI0019790
Description
Glycine max gma-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
15 open access papers mention gma-MIR395f
(71 sentences)

Sequence

gcugucucuuggaguuccucugagcacuucacgcguggggcuaguucuauucaauauuaccauuuagauagaauaguccucaucacugaaaUGAAGUGUUUGGGGGAACUUUuggguacaac
..((((((..(((((((((((((((((((((((.(((((((((.(((((((.((.........)).))))))))))))).)))...))...))))))))))))))))))))).))).)))..

Structure
gc   -   uu                     ---  --c   -      g       c  uau 
  ugu cuc  ggaguuccucugagcacuuca   cg   gug gggcua uucuauu aa   u
  ||| |||  |||||||||||||||||||||   ||   ||| |||||| ||||||| ||   a
  aca ggg  UUUCAAGGGGGUUUGUGAAGU   gu   uac ccugau aagauag uu   c
ca   u   -u                     aaa  cac   u      -       a  uac 


Annotation confidence Not enough data
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Genome context
chr8: 41439069-41439190 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR395f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR395f

Accession MIMAT0023245
Description Glycine max gma-miR395f mature miRNA
Sequence 92 - UGAAGUGUUUGGGGGAACUUU - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553