Stem-loop sequence gma-MIR395f

Accession

MI0019790 (change log)

Description

Glycine max miR395f stem-loop

Gene family

MIPF0000016; MIR395

Literature search

15 open access papers mention gma-MIR395f
(70 sentences)

Stem-loop

   gc   cu  ug         ug         -cg -   ----      g      uc  uau 
5'   ugu  cu  gaguuccuc  agcacuuca   c gug    gggcua uucuau  aa   u
     |||  ||  |||||||||  |||||||||   | |||    |||||| ||||||  ||   a
3'   aca  gg  uucaagggg  uugugaagu   g cac    ccugau aagaua  uu   c
   ca   ug  uu         gu         aaa u   uacu      -      ga  uac 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 41439069-41439190 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR395f

• gma-MIR395g: chr8: 41445444-41445571 [-]
• gma-MIR395f: chr8: 41439069-41439190 [-]

Database links

• miRBase Tracker:MI0019790

Mature sequence gma-miR395f

• Accession: MIMAT0023245
• Sequence: 92 - ugaaguguuugggggaacuuu - 112
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).