miRBase entry: osa-MIR5788

Stem-loop osa-MIR5788


Accession
MI0019798
Description
Oryza sativa osa-MIR5788 precursor miRNA

Literature search
5 open access papers mention osa-MIR5788
(10 sentences)

Sequence

492 reads, 367 reads per million, 2 experiments
aaaaaaacgauucuagaacUGGAUGUGACAUACUCUAGUAcaaugaaucuggauagagguauauccagauucguaguacuaggauaugucacauccaguacuagauugauuuuuuu
(((((((((((.((((.(((((((((((((((.((((((((.(((((((((((((......))))))))))))).)))))))).))))))))))))))).)))))))).)))))))

Structure
       -    u    a               C        a             ga 
aaaaaaa cgau cuag acUGGAUGUGACAUA UCUAGUAc augaaucuggaua  g
||||||| |||| |||| ||||||||||||||| |||||||| |||||||||||||   
uuuuuuu guua gauc ugaccuacacuguau ggaucaug ugcuuagaccuau  g
       a    -    a               a        a             au 


Annotation confidence Not enough data
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Genome context
Chr3: 30006944-30007059 [+]

Database links

Mature osa-miR5788

Accession MIMAT0023253
Description Oryza sativa osa-miR5788 mature miRNA
Sequence 20 - UGGAUGUGACAUACUCUAGUA - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207