Stem-loop osa-MIR812s

Accession

MI0019812

Description

Oryza sativa osa-MIR812s precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812s
(17 sentences)

Sequence

270 reads, 146 reads per million, 2 experiments

uggguuuucguguacaacaugaucguucgucuuauuugaaaauuuuaugaaaaaauuaaaaaaaucacacauaaaguacuauucauauuuuaucauccaauaauaauaaaaauacuaaucacaaaagaauuuuuaauAAGACGGACAAUCAAACGUUGGACacagaaauuc
.(((((((.((((.((((.((((.((((((((((((.(((((((((((((.(((((..............................))))).)))).............................))))))))))))))))))))).))))...)))).)))).)))))))

Structure

u       c    a    --a    c            u         -----------------------------    a     uaaaaaaaucacac 
 ggguuuu gugu caac   ugau guucgucuuauu gaaaauuuu                             auga aaaau              a
 ||||||| |||| ||||   |||| |||||||||||| |||||||||                             |||| |||||               
 cuuaaag caCA GUUG   ACUA CAGGCAGAAuaa uuuuuaaga                             uacu uuuua              u
-       a    G    CAA    A            -         aaacacuaaucauaaaaauaauaauaacc    a     uacuuaucaugaaa 

Annotation confidence Not enough data

Genome context

Chr3: 6033231-6033401 [-]

Mature osa-miR812s

• Accession: MIMAT0023267
• Description: Oryza sativa osa-miR812s mature miRNA
• Sequence: 138 - AAGACGGACAAUCAAACGUUGGAC - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207