miRBase entry: osa-MIR5804

Stem-loop osa-MIR5804


Accession
MI0019820
Description
Oryza sativa osa-MIR5804 precursor miRNA


Sequence

gaucagauugcaucggcaucucuacucugcagccgcugccucugccgccucuuucauccgcuguccgugcgacggcaagagaguguugacagcggcUGCGAAGUAGAGAUGCCGACUugaucugagc
..((((((((..((((((((((((((.(((((((((((..((...((((((((......((((((.....))))))))))).)))..))))))))))))).))))))))))))))..))))))))..

Structure
ga        ca              c           cc  ugc   -     ucaucc      c 
  ucagauug  ucggcaucucuacu ugcagccgcug  uc   cgc cucuu      gcuguc g
  ||||||||  |||||||||||||| |||||||||||  ||   ||| |||||      |||||| u
  agucuagu  AGCCGUAGAGAUGA GCGUcggcgac  ag   gug gagaa      cggcag g
cg        UC              A           --  -uu   a     ------      c 


Annotation confidence Not enough data
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Genome context
Chr4: 20810160-20810286 [-]

Database links

Mature osa-miR5804

Accession MIMAT0023275
Description Oryza sativa osa-miR5804 mature miRNA
Sequence 97 - UGCGAAGUAGAGAUGCCGACU - 117
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207