miRBase entry: osa-MIR5828

Stem-loop osa-MIR5828


Accession
MI0019847
Description
Oryza sativa osa-MIR5828 precursor miRNA


Sequence

4 reads, 5 reads per million, 2 experiments
aaguaacuugUUACGGCAUUAAAAGUAAAUCuauuguggguuuagaaacauaagucuauuuggaaauuaaccccacaauggauuuacuucuaauguugugacaaguuacuu
(((((((((((((((((((((.((((((((((((((((((.((((...((..........))....)))).)))))))))))))))))).)))))))))))))))))))))

Structure
                     A                  u    -aaa  uaag 
aaguaacuugUUACGGCAUUA AAGUAAAUCuauuguggg uuag    ca    u
||||||||||||||||||||| |||||||||||||||||| ||||    ||     
uucauugaacaguguuguaau uucauuuagguaacaccc aauu    gu    c
                     c                  c    aaag  uuau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr6: 16015691-16015801 [+]

Database links

Mature osa-miR5828

Accession MIMAT0023302
Description Oryza sativa osa-miR5828 mature miRNA
Sequence 11 - UUACGGCAUUAAAAGUAAAUC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207