Stem-loop osa-MIR5179

Accession

MI0019851

Description

Oryza sativa osa-MIR5179 precursor miRNA

Gene family

MIPF0001641; MIR5179

Literature search

2 open access papers mention osa-MIR5179
(3 sentences)

Sequence

uugagaggcgUUUUGCUCAAGACCGCGCAACgauuccauaugacaccgcaucguuguccaugccuaucauguucauccagagccccuguugaucuucagauaagagaaaagcucaaaauuaaagaaggcuuguuuauugaucaugucaaggauagguaucgacggcgaugcgcuggcuauggccaugguugugcgguucuugcgcaauaacguuuugaucucga
((((((((((((((((.((((((((((((((.((.(((((...((.((((((((((((.((((((((((((.(((....(((((.(((........)))....(((.....)))............)))))......))).)))......))))))))).)))))))))))).))..)))))..)).))))))))).))))).)))).))))))....))))))

Structure

      ----      -    U     -         g  -u     uga  c            c         ------   u   --ucca     --------------------------c   uug 
uugaga    ggcgUU UUGC CAAGA CCGCGCAAC au  ccaua   ca cgcaucguuguc augccuauc      aug uca      gagcc                           cug   a
||||||    |||||| |||| ||||| ||||||||| ||  |||||   || |||||||||||| |||||||||      ||| |||      |||||                           |||    
agcucu    uugcaa aacg guucu ggcguguug ua  gguau   gu gcguagcggcag uauggauag      uac agu      uucgg                           gac   u
      aguu      u    c     u         g  cc     -cg  c            c         gaacug   u   uauuug     aagaaauuaaaacucgaaaagagaaua   uuc 

Annotation confidence Not enough data

Genome context

Chr2: 12450910-12451133 [+]

Mature osa-miR5179

• Accession: MIMAT0023306
• Description: Oryza sativa osa-miR5179 mature miRNA
• Sequence: 11 - UUUUGCUCAAGACCGCGCAAC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207