miRBase entry: osa-MIR5837

Stem-loop osa-MIR5837


Accession
MI0019858
Description
Oryza sativa osa-MIR5837 precursor miRNA


Sequence

gaauuggaagGGUGAUGUGGAGCGUUCGGCAAUGUUGGAAUGACAUGCAGCUucgaagacauucuugaugcuuuccaagccuauagcuguacagagauggagggaucucaugcaguuuucuuagaaaguuugaugcauugugucucacucugaucaauggcuuagcguuuuguaugcgccuuuuaccuuguc
......((((((((((((((((((((.(((...((((((.(((.(((((((.((((.............((((((.(((.....(((((((..(((((......))))).)))))))..))).)))))))))).))..))))).))).)))))).....))).)))))))))))).))))))))........

Structure
--gaauug        -            C   --AAU      A   C     --  U    agacauucuugau      c   ccuau       ca     gg 
        gaagGGUG AUGUGGAGCGUU GGC     GUUGGA UGA AUGCA  GC ucga             gcuuuc aag     agcugua  gagau  a
        |||||||| |||||||||||| |||     |||||| ||| |||||  || ||||             |||||| |||     |||||||  |||||   
        uuuuccgc uauguuuugcga ucg     uagucu acu ugugu  cg aguu             ugaaag uuc     uugacgu  cucua  g
cuguucca        g            u   guaac      c   c     ua  u    -------------      a   ---uu       -a     gg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr11: 24702021-24702212 [-]

Database links

Mature osa-miR5837.2

Accession MIMAT0023313
Description Oryza sativa osa-miR5837.2 mature miRNA
Sequence 11 - GGUGAUGUGGAGCGUUCGGCA - 31
Evidence experimental
Illumina [1]

Mature osa-miR5837.1

Accession MIMAT0023314
Description Oryza sativa osa-miR5837.1 mature miRNA
Sequence 32 - AUGUUGGAAUGACAUGCAGCU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207