miRBase entry: hco-mir-5884

Stem-loop hco-mir-5884


Accession
MI0019992
Description
Haemonchus contortus hco-mir-5884 precursor miRNA


Sequence

ccggcucauuucgucucacgucUAGGGUACUGACAUUGAAUGAGUugucaugcagaccauuuaauuucguacccuggacguuaugcgaaugcuccugcuu
..((..((((.(((...(((((((((((((.((.((((((((.(((........))))))))))).)))))))))))))))...)))))))..)).....

Structure
---cc  cu    u   cuc             U  C        A   guc 
     gg  cauu cgu   acgucUAGGGUAC GA AUUGAAUG GUu   a
     ||  |||| |||   ||||||||||||| || |||||||| |||    
     cc  guaa gcg   ugcaggucccaug cu uaauuuac cag   u
uucgu  uc    -   uau             -  u        -   acg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5884

Accession MIMAT0023316
Description Haemonchus contortus hco-miR-5884 mature miRNA
Sequence 23 - UAGGGUACUGACAUUGAAUGAGU - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4