miRBase entry: hco-mir-5892a

Stem-loop hco-mir-5892a


Accession
MI0020007
Description
Haemonchus contortus hco-mir-5892a precursor miRNA
Gene family
MIPF0001539; mir-5892


Sequence

uaacgagccuuccgguccugaaguuugcucagaugauccagauguuagucgcccgcauggaaagcAAUUAACAUUUGGAUCAUCUGAAcgaucuucgaggaugcuauucg
.....(((......(((((((((.(((.(((((((((((((((((((((.((((....))...)).))))))))))))))))))))).))).)))).)))))))).....

Structure
uaacg   cuuccg     -    u   c                     c  ---  g 
     agc      guccu gaag uug ucagaugauccagauguuagu gc   cc c
     |||      ||||| |||| ||| ||||||||||||||||||||| ||   ||  
     ucg      uagga cuuc agc AGUCUACUAGGUUUACAAUUA cg   gg a
gcuua   ------     g    u   A                     A  aaa  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5892a

Accession MIMAT0023331
Description Haemonchus contortus hco-miR-5892a mature miRNA
Sequence 66 - AAUUAACAUUUGGAUCAUCUGAA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4