miRBase entry: hco-mir-5893

Stem-loop hco-mir-5893


Accession
MI0020008
Description
Haemonchus contortus hco-mir-5893 precursor miRNA


Sequence

cuuuuucaugucaucuaucccuccgggguccguuaauuuguaccaaaggaguacagUACAAAUUUAUGAACUCCGAAGgugggaggacauagccugauua
.......(((((.(((...(((.((((((.(((.(((((((((............))))))))).))).)))))).)))..))).)))))..........

Structure
---cuuuuuc     a   auc   c      c   u         caaag 
          auguc ucu   ccu cggggu cgu aauuuguac     g
          ||||| |||   ||| |||||| ||| |||||||||      
          uacag agg   gGA GCCUCA GUA UUAAACAUg     a
auuaguccga     g   -gu   A      A   U         acaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5893

Accession MIMAT0023332
Description Haemonchus contortus hco-miR-5893 mature miRNA
Sequence 57 - UACAAAUUUAUGAACUCCGAAG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4