miRBase entry: hco-lin-4

Stem-loop hco-lin-4


Accession
MI0020020
Description
Haemonchus contortus hco-lin-4 precursor miRNA

Literature search
2 open access papers mention hco-lin-4
(5 sentences)

Sequence

ucuuuccucgaucacuauccugcUCCCUGAGACCUCAAUUGCGAcugcuaaaagaucgcgaauugugaccucaggauacaggcgcggugacaaacugggugu
....(((....(((((..((((...((((((..(.(((((((((((......)).)))).))))).)..))))))...))))...)))))......)))...

Structure
ucuu   --ucga     -au    cUC      AC U     -    -  gc 
    ucc      ucacu   ccug   CCUGAG  C CAAUU GCGA cu  u
    |||      |||||   ||||   ||||||  | ||||| |||| ||   
    ggg      agugg   ggac   ggacuc  g guuaa cgcu ga  a
-ugu   ucaaac     cgc    aua      ca u     g    a  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-lin-4

Accession MIMAT0023345
Description Haemonchus contortus hco-lin-4 mature miRNA
Sequence 24 - UCCCUGAGACCUCAAUUGCGA - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4