miRBase entry: hco-mir-5902

Stem-loop hco-mir-5902


Accession
MI0020027
Description
Haemonchus contortus hco-mir-5902 precursor miRNA


Sequence

uugucaguagccaucaacucucUCUGGGAUAACACCUCUCUUCAgcgugaccgucaugAAGAGGAGCGUUGUCACAGUGAgggugaaaguggcugaaugugac
..((((.(((((((..((((((.(((.((((((.(.(((((((((((....)))..)))))))).).)))))).))).))))))....)))))))....))))

Structure
uu    ---g       --ca      U   G      A C        --   u 
  guca    uagccau    acucuc CUG GAUAAC C UCUCUUCA  gcg g
  ||||    |||||||    |||||| ||| |||||| | ||||||||  |||  
  cagu    gucggug    ugggAG GAC CUGUUG G GGAGAAgu  ugc a
--    guaa       aaag      U   A      C A        ac   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5902-5p

Accession MIMAT0023352
Description Haemonchus contortus hco-miR-5902-5p mature miRNA
Sequence 23 - UCUGGGAUAACACCUCUCUUCA - 44
Evidence experimental
Illumina [1]

Mature hco-miR-5902-3p

Accession MIMAT0023353
Description Haemonchus contortus hco-miR-5902-3p mature miRNA
Sequence 59 - AAGAGGAGCGUUGUCACAGUGA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4