miRBase entry: hco-mir-5907

Stem-loop hco-mir-5907


Accession
MI0020035
Description
Haemonchus contortus hco-mir-5907 precursor miRNA


Sequence

uuucuguuucgaauugauuucgaguccaacagagguagucacucaauuaugacgagUGAACCCUUUGUCGUGACAUCGAgaacuuuucgauauuaucgucc
........(((((..(.((((((((((.(((((((...((((((.........))))))..))))))).).))).)))))).)..)))))...........

Structure
---uuucuguu     uu a      -   - a       uag      aau 
           ucgaa  g uuucga guc c acagagg   ucacuc   u
           |||||  | |||||| ||| | |||||||   ||||||   a
           agcuu  c agAGCU CAG G UGUUUCC   AGUgag   u
ccugcuauuau     uu a      A   U C       -CA      cag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5907

Accession MIMAT0023361
Description Haemonchus contortus hco-miR-5907 mature miRNA
Sequence 57 - UGAACCCUUUGUCGUGACAUCGA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4