miRBase entry: hco-mir-5913

Stem-loop hco-mir-5913


Accession
MI0020054
Description
Haemonchus contortus hco-mir-5913 precursor miRNA


Sequence

auuguccagaacucgguauauugcgucucgcugcauccuacuaaaccuucauccgccauuaggcggAUAAAGGUCUAGUAGUGAUGCAgugagagccucucuucugaagu
......(((((...(((........((((((((((((((((((.(((((.(((((((....))))))).))))).)))))).)))))))))))))))....)))))....

Structure
auuguc     -cuc   auauugcg            -      a     c       a 
      cagaa    ggu        ucucgcugcauc cuacua accuu auccgcc u
      |||||    |||        |||||||||||| |||||| ||||| |||||||  
      gucuu    ccg        agagugACGUAG GAUGAU UGGAA UAggcgg u
--ugaa     cucu   --------            U      C     A       a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5913

Accession MIMAT0023382
Description Haemonchus contortus hco-miR-5913 mature miRNA
Sequence 67 - AUAAAGGUCUAGUAGUGAUGCA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4