miRBase entry: hco-mir-5915

Stem-loop hco-mir-5915


Accession
MI0020056
Description
Haemonchus contortus hco-mir-5915 precursor miRNA


Sequence

aaguacauuuUUAAGUAGUGACGCCAUUGUAAcgauuuuuggcuuacauuuggcuuacugcuuaggaauguuuucau
....(((((((((((((((((.((((.((((((.(....).).)))))..)))))))))))))))))))))......

Structure
--aagu                 C    -U     - g u 
      acauuuUUAAGUAGUGA GCCA  UGUAA c a u
      ||||||||||||||||| ||||  ||||| | |  
      uguaaggauucgucauu cggu  acauu g u u
uacuuu                 -    uu     c g u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5915

Accession MIMAT0023384
Description Haemonchus contortus hco-miR-5915 mature miRNA
Sequence 11 - UUAAGUAGUGACGCCAUUGUAA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4