Stem-loop hco-mir-235

Accession

MI0020060

Description

Haemonchus contortus hco-mir-235 precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

augaacacuucgugugucggcuaggucuggucgauugccauguuuggcuaucgaaUAUUGCACUCGCCCCGGCCUGAcugcaccgaagaccuuucgacccu
.......(((((.(((.(((.((((((.((.(((.(((.(((((((.....))))))).))).))).)).)))))).))))))))))).............

Structure

------augaaca     u   u   c      u  u   u   c       g 
             cuucg gug cgg uagguc gg cga ugc auguuug c
             ||||| ||| ||| |||||| || ||| ||| ||||||| u
             gaagc cac guc GUCCGG CC GCU ACG UAUaagc a
ucccagcuuucca     -   -   A      C  C   C   U       u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-235

• Accession: MIMAT0023388
• Description: Haemonchus contortus hco-miR-235 mature miRNA
• Sequence: 56 - UAUUGCACUCGCCCCGGCCUGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4