miRBase entry: hco-mir-5926

Stem-loop hco-mir-5926


Accession
MI0020076
Description
Haemonchus contortus hco-mir-5926 precursor miRNA


Sequence

aagcuuuuguuuuggggaauuccguuccguuucguuccacggagugccgcuccuggugaucuagUGGCACUCCGUGGAACGAAACGGAacgguuccacgauuauuaacga
......((((((((.((((..((((((((((((((((((((((((((((((...((....)))))))))))))))))))))))))))))))))))).))).....)))))

Structure
aagcuu     -----   g    uu                              ccu  u 
      uuguu     uug ggaa  ccguuccguuucguuccacggagugccgcu   gg g
      |||||     ||| ||||  ||||||||||||||||||||||||||||||   ||  
      agcaa     agc ccuu  ggcaAGGCAAAGCAAGGUGCCUCACGGUga   uc a
------     uuauu   a    --                              ---  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5926

Accession MIMAT0023406
Description Haemonchus contortus hco-miR-5926 mature miRNA
Sequence 65 - UGGCACUCCGUGGAACGAAACGGA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4