miRBase entry: hco-mir-5904c

Stem-loop hco-mir-5904c


Accession
MI0020087
Description
Haemonchus contortus hco-mir-5904c precursor miRNA
Gene family
MIPF0001444; mir-5904


Sequence

ccaucgcuucucauaguuuucgagugugauagugguuuuacaaacugaaguauugCAAACCCACUAUUUUCACUUCGAaaaugagaaggucguucucacau
......((((((((...(((((((((.((((((((.(((.(((((....)).))).))).))))))))..))).)))))))))))))).............

Structure
-------ccaucg        agu      -   -u        u   a   -  u 
             cuucucau   uuucga gug  gauagugg uuu caa ac g
             ||||||||   |||||| |||  |||||||| ||| ||| ||  
             gaagagua   aaAGCU CAC  UUAUCACC AAA guu ug a
uacacucuugcug        ---      U   UU        C   C   a  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5904c

Accession MIMAT0023418
Description Haemonchus contortus hco-miR-5904c mature miRNA
Sequence 56 - CAAACCCACUAUUUUCACUUCGA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4