miRBase entry: hco-mir-5918c

Stem-loop hco-mir-5918c


Accession
MI0020091
Description
Haemonchus contortus hco-mir-5918c precursor miRNA
Gene family
MIPF0001395; mir-5918


Sequence

cccccuugcugaugggauaacgggUAAUACGAUUAUGAGGCAAGCUuuuucaaaagcuagccuauacaucguguuacccauugucucaccuccguuggaccuu
...((..((.((((((((((.((((((((((((....((((.((((((....)))))).))))....)))))))))))).))))))))..)).)).)).....

Structure
--ccc  uu  u  --        c            UAUG    A      u 
     cc  gc ga  ugggauaa gggUAAUACGAU    AGGC AGCUuu u
     ||  || ||  |||||||| ||||||||||||    |||| ||||||  
     gg  ug cu  acucuguu cccauugugcua    uccg ucgaaa c
uucca  -u  c  cc        a            caua    a      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5918c

Accession MIMAT0023422
Description Haemonchus contortus hco-miR-5918c mature miRNA
Sequence 25 - UAAUACGAUUAUGAGGCAAGCU - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4