miRBase entry: hco-mir-5935

Stem-loop hco-mir-5935


Accession
MI0020096
Description
Haemonchus contortus hco-mir-5935 precursor miRNA


Sequence

gcgaaacuaaucgagagggccagauugaugccacauuacgaccacucaguugaaaaucaugugAGGGAUCGUAAUGUGGCAUCGAucuggcccuauuuauuuccucccaa
.(((......)))..((((((((((((((((((((((((((((.((((..(((...)))..)))))).))))))))))))))))))))))))))................

Structure
-gcgaaacuaaucgag                          -  a    gu   a 
                agggccagauugaugccacauuacga cc cuca  uga  
                |||||||||||||||||||||||||| || ||||  ||| a
                ucccggucuAGCUACGGUGUAAUGCU GG GAgu  acu  
aacccuccuuuauuua                          A  -    gu   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5935

Accession MIMAT0023427
Description Haemonchus contortus hco-miR-5935 mature miRNA
Sequence 64 - AGGGAUCGUAAUGUGGCAUCGA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4