miRBase entry: hco-mir-5938

Stem-loop hco-mir-5938


Accession
MI0020102
Description
Haemonchus contortus hco-mir-5938 precursor miRNA


Sequence

acgaagaagggaucgguuccccuCGCCGACUUUACCAAGCUUGGCAgccuuagauagauugucggguauggaugucggcauaaaucauugucagauccacgaacuucc
..((((..((((((((....))..((((((....(((.(((((((((.((.....)).))))))))).)))..))))))..............))))).)...)))).

Structure
ac    -aa -     ----gguuccccuC      UUUA   A         c  u 
  gaag   g ggauc              GCCGAC    CCA GCUUGGCAg cu a
  ||||   | |||||              ||||||    ||| ||||||||| || g
  cuuc   c ccuag              cggcug    ggu ugggcuguu ga a
-c    aag a     acuguuacuaaaua      --ua   a         a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5938

Accession MIMAT0023433
Description Haemonchus contortus hco-miR-5938 mature miRNA
Sequence 24 - CGCCGACUUUACCAAGCUUGGCA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4