miRBase entry: hco-mir-5940

Stem-loop hco-mir-5940


Accession
MI0020104
Description
Haemonchus contortus hco-mir-5940 precursor miRNA


Sequence

gagcuguccgaugggccgucgggaaguccggcucagcaggaccgagcccacacucccuccguuGGAGGGAGUGUGGGCUCGGCccugcugagacggcccaucggaccuuc
.....(((((((((((((((((.....))).(((((((((.(((((((((((((((((((...))))))))))))))))))).)))))))))))))))))))))))....

Structure
gagcu              cgggaaguccgg         a                   g 
     guccgaugggccgu            cucagcagg ccgagcccacacucccucc  
     ||||||||||||||            ||||||||| ||||||||||||||||||| u
     caggcuacccggca            gagucgucc GGCUCGGGUGUGAGGGAGG  
-cuuc              ------------         C                   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5940

Accession MIMAT0023435
Description Haemonchus contortus hco-miR-5940 mature miRNA
Sequence 64 - GGAGGGAGUGUGGGCUCGGC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4