miRBase entry: hco-mir-5928b

Stem-loop hco-mir-5928b


Accession
MI0020107
Description
Haemonchus contortus hco-mir-5928b precursor miRNA
Gene family
MIPF0001443; mir-5928


Sequence

ggcccaaaacUGAAGUAAGGUAGAUUAGUAAGGUcagcugauccuacuauucuacuguacuucgaaauugggcccaa
(((((((...(((((((.((((((.(((((.((((....)))).))))).)))))).)))))))...)))))))...

Structure
---       aac       A      U     A    a 
   ggcccaa   UGAAGUA GGUAGA UAGUA GGUc g
   |||||||   ||||||| |||||| ||||| ||||  
   ccggguu   gcuucau ucaucu aucau cuag c
aac       aaa       g      u     c    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5928b

Accession MIMAT0023438
Description Haemonchus contortus hco-miR-5928b mature miRNA
Sequence 11 - UGAAGUAAGGUAGAUUAGUAAGGU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4