miRBase entry: hco-mir-5963

Stem-loop hco-mir-5963


Accession
MI0020135
Description
Haemonchus contortus hco-mir-5963 precursor miRNA


Sequence

uuuaaaaaaaacuccguuucacuucauuuauuagaaaugauggcguugcgagcuuuugauggccggcccacgccaauaagccuguccaaaagCUAUGGCAGAGGGGCGACCAUCgaauuuucaaaguguuccccucaaca
.........(((.(((..(((.(((........))).)))))).)))..(((..((((((((.((.(((.(((((...(((.(......).))).)))).).))).)).))))))))..)))..................

Structure
uuuaaaaaaaacuccguuucacuucauuuauuagaaaugauggcguugc   cu        c  g   a -    aua   c gu 
                                                 gag  uuugaugg cg ccc c gcca   agc u  c
                                                 |||  |||||||| || ||| | ||||   ||| |   
                                                 cuu  aagCUACC GC GGG G CGGU   UCg a  c
-------------------------------acaacuccccuugugaaa   uu        A  G   A A    --A   a aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5963

Accession MIMAT0023467
Description Haemonchus contortus hco-miR-5963 mature miRNA
Sequence 93 - CUAUGGCAGAGGGGCGACCAUC - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4