miRBase entry: hco-mir-5968

Stem-loop hco-mir-5968


Accession
MI0020143
Description
Haemonchus contortus hco-mir-5968 precursor miRNA


Sequence

accgcggcggcugucugaaaguuggcugcugugaguucgucgggaaauacugaaguaugucugcucacaugugaUCAUACUACAGUAGUUCUUGACGAauuuacagcgguccccacucacac
...((....))....((..(((.(((((((((((((((((((((((.(((((.((((((((.((......)))).)))))).))))).)))))))))))))))))))))))...)))..)).

Structure
accgcggcggcuguc  aa   --u                       a     a      -  u  uc 
               ug  agu   ggcugcugugaguucgucgggaa uacug aguaug uc gc  a
               ||  |||   ||||||||||||||||||||||| ||||| |||||| || ||   
               ac  uca   cuggcgacauuuaAGCAGUUCUU AUGAC UCAUAC ag ug  c
--------------c  ac   ccc                       G     A      U  -  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5968

Accession MIMAT0023475
Description Haemonchus contortus hco-miR-5968 mature miRNA
Sequence 75 - UCAUACUACAGUAGUUCUUGACGA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4