miRBase entry: hco-mir-5928e

Stem-loop hco-mir-5928e


Accession
MI0020149
Description
Haemonchus contortus hco-mir-5928e precursor miRNA
Gene family
MIPF0001443; mir-5928


Sequence

auaggaucauuggggcacagauUUCAAGUAAAGUAGGUUAGUAGGAUCagcugacucuacuaaacuaucuuacuucgaauuugugccccaaugauaggcguuagagucgu
.....(((((((((((((((((((.((((((.((((..(((((((.((....)).)))))))..)))).)))))).))))))))))))))))))).(((......)))..

Structure
----------auagg                   C      A    GU       A  a 
               aucauuggggcacagauUU AAGUAA GUAG  UAGUAGG UC g
               ||||||||||||||||||| |||||| ||||  ||||||| ||  
               uaguaaccccguguuuaag uucauu uauc  aucaucu ag c
ugcugagauugcgga                   c      c    aa       c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5928e

Accession MIMAT0023481
Description Haemonchus contortus hco-miR-5928e mature miRNA
Sequence 23 - UUCAAGUAAAGUAGGUUAGUAGGAUC - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4