miRBase entry: hco-mir-5983

Stem-loop hco-mir-5983


Accession
MI0020161
Description
Haemonchus contortus hco-mir-5983 precursor miRNA

Literature search
1 open access papers mention hco-mir-5983
(1 sentences)

Sequence

cucguuucguggcgugcagugcgagucuaucgugucucaaagcgaguauuaccugcUUUGGCACAUGUUAGGCCGGCAguacagcccgaguauuggaaguc
((.((((((.(((((((..(((..(((((.(((((.((((((((.((...)).)))))))).))))).)))))..))))))).))))))).)).)).....

Structure
-----  c  -    u   -    ag   ga     u     c        a  a 
     cu gu uucg ggc gugc  ugc  gucua cgugu ucaaagcg gu  
     || || |||| ||| ||||  |||  ||||| ||||| |||||||| || u
     gg ua gagc ccg caug  ACG  CGGAU GUACA GGUUUcgu ca  
cugaa  u  u    -   a    --   GC     U     C        c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5983

Accession MIMAT0023493
Description Haemonchus contortus hco-miR-5983 mature miRNA
Sequence 57 - UUUGGCACAUGUUAGGCCGGCA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4